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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs28877312 chr4:157389849 C/A 9.94E-5 485 16.05 15.87 15.17 KM Plot
THCA rs2888465 chr11:77945807 T/C 8.2E-5 484 16.73 15.27 11.7 KM Plot
THCA rs28927674 chr14:59797373 G/A 1.4E-8 488 16.38 12.62 5.45 KM Plot
THCA rs2898275 chr21:37458943 A/G 0.000117 480 16.63 14.33 9.73 KM Plot
THCA rs2898949 chr11:4164967 C/T 1.74E-7 490 19.05 13.9 16.38 KM Plot
THCA rs2905499 chr11:60829713 A/G 6.3E-5 475 20.8 15.83 15.7 KM Plot
THCA rs2909209 chr17:66446136 G/A 0.000139 482 15.03 14.93 16.3 KM Plot
THCA rs2919129 chr2:55216545 G/T 0.000198 490 17.73 15.97 13.23 KM Plot
THCA rs2920893 chr2:55270629 C/T 0.000167 480 17.72 16.08 12.37 KM Plot
THCA rs2923951 chr11:4043196 A/T 0.000211 489 19.23 16.82 15.87 KM Plot
THCA rs2925342 chr15:41305733 A/G 0.000271 489 16.67 16.8 14.57 KM Plot
THCA rs2925346 chr15:41315695 G/A 0.000275 490 16.62 16.8 14.57 KM Plot
THCA rs2927061 chr15:41302219 A/G 0.000256 490 14.57 16.8 16.57 KM Plot
THCA rs2927062 chr15:41302687 A/G 0.00027 490 14.67 16.73 16.67 KM Plot
THCA rs2928142 chr15:41470449 T/C 0.000287 490 17.6 15.87 15.3 KM Plot